| World War 3 Illustrated #1 | Vol. 1 #1 | 1980 | Softcover |
| Stop! Magazine #1 | Vol. 1 #1 | 1982 | Softcover |
| Stop! Magazine #4 | Vol. 1 #4 | 1982 | Softcover |
| Wacky World of Peter Bagge and Ken Weiner | Vol. 1 #nn | 1982 | |
| Stop! Magazine #9 | Vol. 1 #9 | 1984 | Softcover |
| Neat Stuff #1 | Vol. 1 #1 | 1985 | |
| Neat Stuff #2 | Vol. 1 #2 | 1985 | |
| Neat Stuff #3 | Vol. 1 #3 | 1986 | |
| Neat Stuff #4 | Vol. 1 #4 | 1986 | |
| Neat Stuff #5 | Vol. 1 #5 | 1986 | |
| Neat Stuff #6 | Vol. 1 #6 | 1986 | |
| Roadkill Magazine | Vol. 1 #nn | 1986 | |
| Anything Goes! #4 | Vol. 1 #4 | 1987 | |
| Honk! #2 | #2 | 1987 | Softcover |
| Neat Stuff #7 | Vol. 1 #7 | 1987 | |
| Neat Stuff #8 | Vol. 1 #8 | 1987 | |
| Twist #1 | Vol. 1 #1 | 1987 | |
 | White Collar Crime / Cartoon Man's Best Friend / Steroids / The Amazons / Dead-End Job / Characters From Everyday Life / Hlep For The Dyslexic / Maxwell, The Magic Cat / Deadlines / Danger Dan / Growing Up Weird / Donald Dogfly #2 | #2 | 1987-03 | Softcover |
 | The Best of Neat Stuff | | 1987-12 | Trade Paperback |
| Neat Stuff #9 | Vol. 1 #9 | 1988 | |
| Neat Stuff #10 | Vol. 1 #10 | 1988 | |
| Neat Stuff #11 | Vol. 1 #11 | 1988 | |
| Twist #2 | Vol. 1 #2 | 1988 | |
 | Hippy House: An Epic Journey Across Town #9 | #9 | 1988-03-00 | Trade Paperback |
| Corpsemeat #2 | Vol. 1 #2 | 1989 | |
| Firesale | Vol. 1 #nn | 1989 | |
| Neat Stuff #12 | Vol. 1 #12 | 1989 | |
| Neat Stuff #13 | Vol. 1 #13 | 1989 | |
 | The Goon On The Moon / Junior / Studs Kirby #14 | Vol. 1 #14 | 1989-09 | Softcover |
 | Buddy the Weasel #15 | Vol. 1 #15 | 1989-12 | Softcover |
| Drawn & Quarterly #1 | Vol. 1 #1 | 1990 | |
| Urban Legends #1 | Vol. 1 #1 | 1993 | |
| Different Beat Comics | Vol. 1 #nn | 1994 | |
 | Leck Mich! #1 | #1 | 1994-04 | Softcover |
 | Buddy the Dreamer | ##6-10 | 1994-05 | Trade Paperback |
 | Leck Mich! #2 | #2 | 1994-06 | Softcover |
 | Leck Mich! #3 | #3 | 1994-08 | Softcover |
 | Leck Mich! #4 | #4 | 1994-10 | Softcover |
 | The Daily Routine / Meet The Folks! / I Need A Drink! #16 | Vol. 1 #16 | 1994-10 | Softcover |
 | Leck Mich! #5 | #5 | 1994-12 | Softcover |
 | Conflict Resolution / Let's Get Serious #17 | Vol. 1 #17 | 1995-01 | Softcover |
 | Leck Mich! #6 | #6 | 1995-02 | Softcover |
 | Brother Butch #18 | #18 | 1995-04 | Softcover |
 | Leck Mich! #7 | #7 | 1995-04 | Softcover |
 | Leck Mich! #8 | #8 | 1995-06 | Softcover |
 | Partners #19 | #19 | 1995-06 | Softcover |
 | Leck Mich! #9 | #9 | 1995-08 | Softcover |
 | Uncle Buddy / Who Will Cut My Hair? #20 | #20 | 1995-09 | Softcover |
 | I've Got Three Moms! / Flowertown, U.S.A. #21 | #21 | 1995-12 | Softcover |
 | Dear Old Dad / King Of The Airwaves / Doofus! #22 | #22 | 1996-03 | Softcover |
 | Buddy Cleans House / The History Of My Penis, Part One / Fascist Cartoonist / Kickin' Ass / Up The Irish! / "Pot"tery / Truth Is "Stanger" Than Fiction, Part II: I Want To Be Cloned! / Doofus / Caffy! #27 | #27 | 1997-04 | Softcover |
 | Buddy Go Home! | ##16-20 | 1997-11 | Trade Paperback |
| Hate Jamboree! | Vol. 1 #nn | 1998 | Softcover |
 | Krass! #1 | #1 | 1998-12 | Softcover |
| A Slice of Life #1 | Vol. 1 #1 | 1999 | |
| Yeah! #1 | Vol. 1 #1 | 1999 | Softcover |
| Yeah! #2 | Vol. 1 #2 | 1999 | Softcover |
| Yeah! #3 | Vol. 1 #3 | 1999 | Softcover |
 | Krass! #2 | #2 | 1999-03 | Softcover |
 | Buddy's Got Three Moms | ##21-25 | 1999-06 | Trade Paperback |
 | Krass! #3 | #3 | 1999-06 | Softcover |
 | Krass! #4 | #4 | 1999-09 | Softcover |
 | Krass! #5 | #5 | 1999-12 | Softcover |
| Hate Annual #1 | Vol. 1 #1 | 2000 | Softcover |
| Yeah! #4 | Vol. 1 #4 | 2000 | Softcover |
| Yeah! #5 | Vol. 1 #5 | 2000 | Softcover |
| Yeah! #6 | Vol. 1 #6 | 2000 | Softcover |
| Yeah! #7 | Vol. 1 #7 | 2000 | Softcover |
| Yeah! #8 | Vol. 1 #8 | 2000 | Softcover |
| Yeah! #9 | Vol. 1 #9 | 2000 | Softcover |
 | Krass! #6 | #6 | 2000-03 | Softcover |
 | Krass! #7 | #7 | 2000-06 | Softcover |
| Hate Annual #2 | Vol. 1 #2 | 2001 | Softcover |
 | Buddy Bites the Bullet | ##22, 26-30 | 2001-03 | Trade Paperback |
| Hate Annual #3 | Vol. 1 #3 | 2002 | Softcover |
| Startling Stories:The Megalomaniacal Spider-Man #1 | Vol. 1 #1 | 2002 | |
| Hate Annual #4 | Vol. 1 #4 | 2003 | Softcover |
| Sweatshop #1 | Vol. 1 #1 | 2003 | Softcover |
| Sweatshop #2 | Vol. 1 #2 | 2003 | Softcover |
| Sweatshop #3 | Vol. 1 #3 | 2003 | Softcover |
| Sweatshop #4 | Vol. 1 #4 | 2003 | Softcover |
| Sweatshop #6 | Vol. 1 #6 | 2003 | Softcover |
 | A Convention To Remember #5 | Vol. 1 #5 | 2003-10 | Softcover |
| Hate Annual #5 | Vol. 1 #5 | 2004 | Softcover |
| Mineshaft #13 | Vol. 1 #13 | 2004 | Softcover |
 | Star Wars Tales #20 | Vol. 1 #20 | 2004 | Softcover |
| Apocalypse Nerd #1 | Vol. 1 #1 | 2005 | |
| Apocalypse Nerd #2 | Vol. 1 #2 | 2005 | |
| Hate Annual #6 | Vol. 1 #6 | 2005 | Softcover |
| Apocalypse Nerd #3 | Vol. 1 #3 | 2006 | |
| Apocalypse Nerd #4 | Vol. 1 #4 | 2006 | |
| Apocalypse Nerd #5 | Vol. 1 #5 | 2006 | |
| Apocalypse Nerd #6 | Vol. 1 #6 | 2006 | |
| Hate Annual #7 | Vol. 1 #7 | 2006 | Softcover |
| Mineshaft #19 | Vol. 1 #19 | 2007 | Softcover |
 | The Bradleys | | 2007 | Trade Paperback |
 | Apocalypse Nerd | | 2008 | Trade Paperback |
 | Everybody Is Stupid Except Me | | 2009 | Trade Paperback |
 | Apocalypse Nerd | | 2010 | Trade Paperback |
| Hate Annual #8 | Vol. 1 #8 | 2010 | Softcover |
 | Other Lives | | 2010 | Hardcover |
 | Bat Boy: The Weekly World News Comic Strips by Peter Bagge | | 2011 | Hardcover |
| Hate Annual #9 | Vol. 1 #9 | 2011 | Softcover |
 | Yeah! | | 2011 | Softcover |
| Reset #1 | Vol. 1 #1 | 2012 | Softcover |
| Reset #2 | Vol. 1 #2 | 2012 | Softcover |
| Reset #3 | Vol. 1 #3 | 2012 | Softcover |
| Reset #4 | Vol. 1 #4 | 2012 | Softcover |
 | Woman Rebel: The Margaret Sanger Story | | 2013-09 | Hardcover |
 | Buddy Buys a Dump | | 2014-05-17 | Trade Paperback |
 | Founding Fathers Funnies | | 2016 | Hardcover |
 | Fire!!: The Zora Neale Hurston Story | | 2017 | Hardcover |
 | Credo: The Rose Wilder Lane Story | | 2019-03 | Hardcover |